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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
SPARCL1 8404 SPARC-like 1 (hevin)  4MAST9 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
21887554   2011Cell line : -

Source : Departments of Pathology from Linkping University Hospital, Linkping, and Vrinnevi Hospital, Norrkping, Sweden

Sample Type : -

No. of Sample : normal colorectal mucosa and primary and lymph node metastatic tumors from 164 patients with primary colorectal adenocarcinomas

Stage : TNM Stage I-IV

ImmunohistochemistryUp-regulation-Expression of SPARCL1 protein might be a valuable biomarker for early diagnosis in colorectal cancers and further predicting patients' prognosis.

SPARCL1 was negative in the distant normal colorectal mucosa, weakly expressed in the adjacent normal mucosa, strongly expressed in primary colorectal adenocarcinomas and slightly expressed in their lymph node metastases.


Gene Details



Chromosome 4 - NC_000004.12 (87473330..87529503, complement)

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Gene Type protein coding
Gene Family EF-hand domain containing
Description -  
Chromosome 4
Location 4q22-q25
Start 87473330  
End 87529503  
Strand -  
Gene Sequence

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Length 56174  
OMIM ID 606041   
HGNC ID HGNC:11220   
Unigene ID Hs.62886   
Ensembl ID ENSG00000152583   
PharmGKB ID -   

mRNA Information


mRNA ID NM_004684.5
Exon join(1..459,29919..29983,34377..34523,34906..35922, 37814..37886,38626..38744,39111..39231,46944..47080, 48984..49132,49926..50074,55701..56174)  
mRNA Sequence

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Length 3012  



CDS Information


   
Location join(29930..29983,34377..34523,34906..35922,37814..37886, 38626..38744,39111..39231,46944..47080,48984..49132, 49926..50074,55701..55729)
CDS Sequence

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CCDS ID CCDS3622.1



Protein Information


      
Protein IDNP_001121782.1
Protein NameSPARC-like 1 (hevin)
Molecular Wt. (Da)73569
Protein Sequence

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Length 664  
Uniprot IDP40933
Ensembl Protein ID ENSP00000296545  



Post-translational Modification Information (Source : HPRD)


Residue Type site
SPhosphorylation295
SPhosphorylation84
SPhosphorylation91
SPhosphorylation92
SPhosphorylation198
SPhosphorylation272

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

               
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
5621PRNP1453NP_000302.1in vivo15146195   


Pathway Information


No matching records could be found.

Structure Information


No matching records could be found.

Domain Information




ID Location Description
cd00252514-662  SPARC_EC
cl22905514-662  SPARC_EC superfamily
pfam10591513-650  SPARC_Ca_bdg
cd01328433-512  FSL_SPARC
cl00097433-512  KAZAL_FS superfamily
pfam00050456-509  Kazal_1
smart00280455-509  KAZAL
pfam07648465-509  Kazal_2
cd00104462-509  KAZAL_FS
pfam09289433-454  FOLN
cl23022433-454  FOLN superfamily
smart00274432-455  FOLN
cl23052432-455  FOLN superfamily
cd01327462-485  KAZAL_PSTI
pfam07423232-299  DUF1510
cl22487232-299  DUF1510 superfamily
COG527123-400  MDN1
PRK085811-297  PRK08581


Ontology Information


   
HPRD ID4396
Molecular ClassSecreted polypeptide
Molecular FunctionCytokine activity (GO:0005125)
Biological ProcessImmune response (GO:0006955)  



SNP Information


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Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO