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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
TDG 6996 thymine-DNA glycosylase  12 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
24532795   2014Cell line : -

Source : Nanfang Hospital in China

Sample Type : CRC tumor and normal tissue

No. of Sample : -

Stage : -

RT-PCR, Chromatin immunoprecepetationUp-regulation-TDG warrants consideration as a potential biomarker for CRC and as a target for CRC treatment.

In CRC patients, TDG levels were significantly higher in tumor tissues than in the adjacent normal tissues.




Gene Details



Chromosome 12 - NC_000012.12 (103965815..103988878)

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Gene Type protein coding
Gene Family
Description The protein encoded by this gene belongs to the TDG/mug DNA glycosylase family. Thymine-DNA glycosylase (TDG) removes thymine moieties from G/T mismatches by hydrolyzing the carbon-nitrogen bond between the sugar-phosphate backbone of DNA and the mispaired thymine. With lower activity, this enzyme also removes thymine from C/T and T/T mispairings. TDG can also remove uracil and 5-bromouracil from mispairings with guanine. This enzyme plays a central role in cellular defense against genetic mutation caused by the spontaneous deamination of 5-methylcytosine and cytosine. This gene may have a pseudogene in the p arm of chromosome 12.  
Chromosome 12
Location 12q24.1
Start 103965815  
End 103988878  
Strand +  
Gene Sequence

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Length 23064  
OMIM ID 601423   
HGNC ID HGNC:11700   
Unigene ID Hs.584809   
Ensembl ID ENSG00000139372   
PharmGKB ID -   

mRNA Information


mRNA ID NM_003211.4
Exon join(1..246,11104..11246,14017..14258,15079..15148, 16985..17120,17322..17404,17481..17575,18935..19106, 19789..19914,21134..23064)  
mRNA Sequence

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Length 3251  



CDS Information


   
Location join(224..246,11104..11246,14017..14258,15079..15148, 16985..17120,17322..17404,17481..17575,18935..19106, 19789..19914,21134..21276)
CDS Sequence

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CCDS ID CCDS9095.1



Protein Information


      
Protein IDNP_003202.3
Protein Namethymine-DNA glycosylase
Molecular Wt. (Da)45922
Protein Sequence

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Length 410  
Uniprot IDP05019
Ensembl Protein ID ENSP00000302665  



Post-translational Modification Information (Source : HPRD)


Residue Type site
KAcetylation59
KAcetylation83
KAcetylation84
KAcetylation87

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

                                                                                                                                                      
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
1387CREBBP2534NP_004371.2in vitro;in vivo;yeast 2-hybrid11864601   
2099ESR1589NP_000116.2in vitro;in vivo;yeast 2-hybrid12874288   
3725JUN1302NP_002219.1in vivo;yeast 2-hybrid1631061   
4089SMAD42995NP_005350.1yeast 2-hybrid15231748   
5371PML23NP_150241.2in vitro;in vivo15569683   
6256RXRA1577NP_002948.1in vitro;in vivo12874288   
7080NKX2-12798NP_001073136.1in vitro;yeast 2-hybrid11438542   
7508XPC2046NP_004619.3in vitro;yeast 2-hybrid12505994   
7919BAT1805NP_004631.1yeast 2-hybrid14667819   
79753SNIP16999NP_078976.2yeast 2-hybrid15231748   


Pathway Information


      
Pathway Name Pathway ID
Base excision repair hsa03410


Structure Information


PDB ID1WYW
Resolution2.1
MethodX-RAY DIFFRACTION
Chains A  
Molecule G/T mismatch-specific thymine DNA glycosylase  
Model View



Domain Information




ID Location Description
cd10028124-294  UDG_F2_MUG
cl00483124-294  UDG_like superfamily
TIGR005842-329  mug
PRK10201126-273  PRK10201
pfam03167131-293  UDG
COG3663124-283  Mug
smart00987131-244  UreE_C
smart00986131-285  UDG
cd09593134-232  UDG_like
TIGR04274124-163  hypoxanDNAglyco
COG0810Jun-81  TonB


Ontology Information


   
HPRD ID928
Molecular ClassDNA repair protein
Molecular FunctionReceptor activity (GO:0004872)
Biological ProcessCell communication (GO:0007154); Signal transduction (GO:0007165)  



SNP Information


View SNP Geneview Report   

Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO