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General Information



Gene_Symbol Gene_ID Gene_Name Chromosome Alias
ZEB2 9839 zinc finger E-box binding homeobox 2  2KIAA0569, SIP-1, SIP1 







  • Evidence
  • Gene
  • mRNA
  • CDS
  • Protein
  • PTM
  • Enzyme
  • PPi
  • Pathway
  • Structural
  • Domain
  • Ontology
  • SNP
  • Drug
  • External Links



Evidence Information


Pubmed ID Year Sample Information Techniques Mechanism Fold Change Remark
22042972   2011Cell line : -

Source : Department of General, Visceral, and Transplantation Surgery, University of Heidelberg

Sample Type : CRC tumor and normal tissue

No. of Sample : 175

Stage : -

real time RT-PCR, immunohistochemistryUp-regulation-ZEB2 may be interesting as biomarker and potential target for treatment of colorectal cancer.

Overexpression of ZEB2 at the invasion front correlates with tumor progression and predicts cancer-specific survival in primary colorectal cancer.


Gene Details



Chromosome 2 - NC_000002.12 (144384375..144520393, complement)

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Gene Type protein coding
Gene Family Zinc fingers, C2H2-type, "Homeoboxes / ZF class"
Description The protein encoded by this gene is a member of the Zfh1 family of 2-handed zinc finger/homeodomain proteins. It is located in the nucleus and functions as a DNA-binding transcriptional repressor that interacts with activated SMADs. Mutations in this gene are associated with Hirschsprung disease/Mowat-Wilson syndrome. Alternatively spliced transcript variants have been found for this gene.  
Chromosome 2
Location 2q22.3
Start 144384375  
End 144520393  
Strand -  
Gene Sequence

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Length 136019  
OMIM ID 605802   
HGNC ID HGNC:14881   
Unigene ID Hs.34871   
Ensembl ID ENSG00000169554   
PharmGKB ID -   

mRNA Information


mRNA ID NM_001171653.1
Exon join(3..455,2975..3116,90368..90625,115370..115558, 116264..116478,119087..119195,120124..122093, 123802..123982,130366..136019)  
mRNA Sequence

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Length 9171  



CDS Information


   
Locationjoin(404..455,90368..90625,95527..95598,115370..115558, 116264..116478,119087..119195,120124..122093, 123802..123982,130366..130943)
CDS Sequence

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CCDS ID -



Protein Information


      
Protein IDNP_001165124.1
Protein Namezinc finger E-box binding homeobox 2
Molecular Wt. (Da)133676
Protein Sequence

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Length 1190  
Uniprot IDP23229
Ensembl Protein ID ENSP00000264107  



Post-translational Modification Information (Source : HPRD)


Residue Type site
TPhosphorylation782
SPhosphorylation784
KAcetylation377
KAcetylation372
SPhosphorylation1203

Enzyme Information


No matching records could be found.

PPi Information


(Click to view network : Source STRING)      View   

                                                                                                                        
Interactant Gene ID (Source: HPRD) Gene Symbol HPRD ID Ref Seq ID Technique References
1487CTBP14015NP_001319.1in vivo;yeast 2-hybrid12714599   
1488CTBP24016NP_073713.2in vivo;yeast 2-hybrid12714599   
4086SMAD13356NP_005891.1yeast 2-hybrid104   006   771   523   174   000   000   000   
4087SMAD23221NP_005892.1in vitro;in vivo;yeast 2-hybrid104   006   771   523   174   000   000   000   
4088SMAD34380NP_005893.1yeast 2-hybrid104   006   771   523   174   000   000   000   
4090SMAD54381NP_005894.3yeast 2-hybrid1   040   067   712   714   590   
4093SMAD94484BAA21128.1yeast 2-hybrid15231748   
10980COPS616735NP_006824.2yeast 2-hybrid16169070   


Pathway Information


      
Pathway Name Pathway ID
MicroRNAs in cancer hsa05206


Structure Information


PDB ID2DA7
Resolution
MethodSOLUTION NMR
Chains A  
Molecule Zinc finger homeobox protein 1b  
Model View



Domain Information




ID Location Description
cd00086653-695  homeodomain
cl00084653-695  homeodomain superfamily
pfam13465296-319  zf-H2C2_2
cl22375296-319  zf-H2C2_2 superfamily
pfam134651041-1066  zf-H2C2_2
cl223751041-1066  zf-H2C2_2 superfamily
pfam134651013-1038  zf-H2C2_2
cl223751013-1038  zf-H2C2_2 superfamily
smart00389650-696  HOX
pfam00096282-304  zf-C2H2
cl23491282-304  zf-C2H2 superfamily
smart00355282-304  ZnF_C2H2
cl18194282-304  ZnF_C2H2 superfamily
COG50481024-1125  COG5048
COG5576594-726  COG5576


Ontology Information


   
HPRD ID961
Molecular ClassTranscription regulatory protein
Molecular FunctionTranscription regulator activity (GO:0030528)
Biological ProcessRegulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism (GO:0019219)  



SNP Information


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Drug Information


No matching records could be found.

External Links


                                 
ArrayExpressGO
ICGCGO
Cancer3DGO
COSMICGO
NCGGO
TSGeneGO
Tumor Gene Family of DatabasesGO
CCDBGO
G2SBCGO
Osteosarcoma DatabaseGO
RCDBGO